STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_1967TIGRFAM: sulfate transporter; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: aeh:Mlg_1668 sulfate transporter. (588 aa)    
Predicted Functional Partners:
Hhal_1966
PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: tbd:Tbd_2201 probable transmembrane protein.
 
    0.805
Hhal_1700
PFAM: carbonic anhydrase; KEGG: mxa:MXAN_0617 putative carbonic anhydrase.
 
  
 0.720
Hhal_1710
PFAM: metallophosphoesterase; KEGG: aeh:Mlg_0828 metallophosphoesterase.
   
   0.606
Hhal_2108
Cytochrome b/b6, N-terminal domain; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
    
   0.548
Hhal_0198
PFAM: Ankyrin; KEGG: aeh:Mlg_2666 ankyrin.
    
   0.486
Hhal_1844
PFAM: Ankyrin; KEGG: rno:294988 ankyrin repeat domain 50 (predicted).
    
   0.486
Hhal_0149
KEGG: mgm:Mmc1_0877 cytochrome c family protein.
    
   0.469
Hhal_1891
KEGG: sde:Sde_1421 hypothetical protein.
    
   0.469
Hhal_1964
Histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: aeh:Mlg_1670 signal transduction histidine kinase, nitrate/nitrite-specific, NarQ.
  
    0.466
Hhal_1965
PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: aeh:Mlg_1669 two component transcriptional regulator, LuxR family.
  
    0.465
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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