Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Hhal_1969PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: aeh:Mlg_0533 surface antigen (D15). (573 aa)    
Predicted Functional Partners:
Hhal_1968
PFAM: protein of unknown function DUF490; KEGG: aeh:Mlg_0534 protein of unknown function DUF490.
 0.999
Hhal_1970
PFAM: GCN5-related N-acetyltransferase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: aeh:Mlg_0532 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
       0.546
Hhal_0212
TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: aeh:Mlg_1465 lytic murein transglycosylase.
  
     0.470
Hhal_2295
PFAM: major facilitator superfamily MFS_1; KEGG: aeh:Mlg_0747 major facilitator superfamily MFS_1.
  
     0.456
Hhal_0599
KEGG: aeh:Mlg_2284 hypothetical protein.
  
     0.450
lptD
Organic solvent tolerance protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
  
     0.447
bamA
Surface antigen (D15); Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
   
0.414
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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