STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_2006KEGG: aeh:Mlg_0605 hypothetical protein. (166 aa)    
Predicted Functional Partners:
mpl
UDP-N-acetylmuramate; Reutilizes the intact tripeptide L-alanyl-gamma-D-glutamyl- meso-diaminopimelate by linking it to UDP-N-acetylmuramate. Belongs to the MurCDEF family. Mpl subfamily.
       0.800
ubiX
3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.
       0.800
Hhal_2009
PFAM: peptidase S16, lon domain protein; KEGG: aeh:Mlg_0602 peptidase S16, lon domain protein.
       0.790
Hhal_2116
KEGG: aeh:Mlg_2219 anti-sigma-factor antagonist.
  
     0.738
Hhal_0024
KEGG: aeh:Mlg_1360 pyrimidine reductase, riboflavin biosynthesis, RibD.
  
     0.721
Hhal_0655
KEGG: aeh:Mlg_0585 hypothetical protein.
  
     0.684
Hhal_2437
PFAM: ATP synthase I chain; KEGG: aeh:Mlg_2876 ATP synthase I chain.
  
     0.665
Hhal_1059
PFAM: NUDIX hydrolase; KEGG: aeh:Mlg_2766 NUDIX hydrolase; Belongs to the Nudix hydrolase family.
  
     0.650
Hhal_2036
KEGG: aeh:Mlg_2088 hypothetical protein.
  
     0.561
lptE
Rare lipoprotein B; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane.
  
     0.539
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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