STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_2016PFAM: CBS domain containing protein; KEGG: aeh:Mlg_2074 putative signal transduction protein with CBS domains. (144 aa)    
Predicted Functional Partners:
Hhal_2017
PFAM: MotA/TolQ/ExbB proton channel; KEGG: aeh:Mlg_2075 MotA/TolQ/ExbB proton channel.
       0.709
Hhal_0178
PFAM: CBS domain containing protein; KEGG: aeh:Mlg_2674 putative signal transduction protein with CBS domains.
  
     0.694
Hhal_2018
PFAM: OmpA/MotB domain protein; KEGG: aeh:Mlg_2076 OmpA/MotB domain protein.
       0.672
rhlB
DEAD/DEAH box helicase domain protein; DEAD-box RNA helicase involved in RNA degradation. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. Belongs to the DEAD box helicase family. RhlB subfamily.
       0.545
Hhal_2019
PFAM: Rhomboid family protein; KEGG: aeh:Mlg_2078 rhomboid family protein.
       0.514
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
     
 0.496
Hhal_0952
PFAM: histone deacetylase superfamily; KEGG: aeh:Mlg_0335 histone deacetylase superfamily.
  
    0.475
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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