STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_2102PFAM: LppC family lipoprotein; KEGG: aeh:Mlg_2204 LppC family lipoprotein. (631 aa)    
Predicted Functional Partners:
Hhal_2103
PFAM: protein of unknown function UPF0102; KEGG: aeh:Mlg_2205 protein of unknown function UPF0102; Belongs to the UPF0102 family.
     
 0.833
gmhA
Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.
 
    0.777
Hhal_2253
KEGG: aeh:Mlg_2754 penicillin-binding protein, 1A family; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase.
  
 
 
 0.763
rsmI
Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.664
Hhal_0709
KEGG: aeh:Mlg_0517 hypothetical protein.
  
     0.654
zipA
Cell division protein ZipA; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins.
  
     0.589
Hhal_1028
PFAM: HemY domain protein; Tetratricopeptide TPR_4; KEGG: aeh:Mlg_2667 HemY domain protein.
  
     0.510
lolB
Outer membrane lipoprotein LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.
  
   
 0.508
Hhal_0910
PFAM: heat shock protein DnaJ domain protein; KEGG: aeh:Mlg_2252 heat shock protein DnaJ domain protein.
  
     0.490
Hhal_1206
PFAM: protein of unknown function DUF1243; KEGG: aeh:Mlg_0070 protein of unknown function DUF1243.
  
    0.457
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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