STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_2116KEGG: aeh:Mlg_2219 anti-sigma-factor antagonist. (104 aa)    
Predicted Functional Partners:
Hhal_2117
PFAM: toluene tolerance family protein; KEGG: aeh:Mlg_2220 toluene tolerance family protein.
  
 
 0.988
Hhal_2118
PFAM: Mammalian cell entry related domain protein; KEGG: aeh:Mlg_2221 mammalian cell entry related domain protein.
 
 0.974
Hhal_2120
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aeh:Mlg_2223 ABC transporter related.
 
 0.972
Hhal_2119
PFAM: protein of unknown function DUF140; KEGG: aeh:Mlg_2222 protein of unknown function DUF140.
 
 0.967
Hhal_1840
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nmu:Nmul_A1611 ABC transporter related.
  
 0.881
Hhal_1841
PFAM: Mammalian cell entry related domain protein; KEGG: pen:PSEEN0096 hypothetical protein.
  
 0.879
Hhal_1839
PFAM: protein of unknown function DUF140; KEGG: pen:PSEEN0098 ABC transporter, permease protein.
  
 0.869
Hhal_2006
KEGG: aeh:Mlg_0605 hypothetical protein.
  
     0.738
Hhal_2115
PFAM: BolA family protein; KEGG: cyb:CYB_2713 BolA/YrbA family protein; Belongs to the BolA/IbaG family.
       0.680
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
       0.659
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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