STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lptAOstA family protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm. (175 aa)    
Predicted Functional Partners:
Hhal_2123
PFAM: protein of unknown function DUF1239; KEGG: aeh:Mlg_2227 protein of unknown function DUF1239.
  
 
 0.997
Hhal_2125
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aeh:Mlg_2229 ABC transporter related.
  
  
 0.991
lptD
Organic solvent tolerance protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
  
 
 0.901
Hhal_2122
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family.
  
  
 0.887
Hhal_2121
KEGG: aeh:Mlg_2225 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS).
  
  
 0.859
Hhal_2126
RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
  
 0.853
Hhal_2127
TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: aeh:Mlg_2231 sigma 54 modulation protein/ribosomal protein S30EA.
     
 0.728
Hhal_2118
PFAM: Mammalian cell entry related domain protein; KEGG: aeh:Mlg_2221 mammalian cell entry related domain protein.
  
    0.682
Hhal_2130
Uncharacterized P-loop ATPase protein UPF0042; Displays ATPase and GTPase activities.
  
    0.680
Hhal_2120
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aeh:Mlg_2223 ABC transporter related.
 
     0.675
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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