STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_2171PFAM: isochorismatase hydrolase; KEGG: aeh:Mlg_2418 isochorismatase hydrolase. (187 aa)    
Predicted Functional Partners:
Hhal_1126
TIGRFAM: isochorismate synthases; PFAM: Anthranilate synthase component I and chorismate binding protein; KEGG: rxy:Rxyl_2897 isochorismate synthases.
  
 
 0.942
Hhal_2172
PFAM: outer membrane lipoprotein Slp; KEGG: aeh:Mlg_2419 outer membrane lipoprotein Slp.
       0.773
Hhal_2173
TIGRFAM: outer membrane lipoprotein, Slp family; PFAM: outer membrane lipoprotein Slp; KEGG: aeh:Mlg_2420 outer membrane lipoprotein Slp.
       0.773
hemF
Coproporphyrinogen oxidase; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX.
 
      0.715
Hhal_2170
PFAM: Hpt domain protein; KEGG: sru:SRU_2427 probable sensor/response hybrid, putative.
       0.675
Hhal_2175
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aeh:Mlg_1042 ABC transporter related.
  
    0.635
Hhal_2174
ABC-3 protein; PFAM: transport system permease protein; ABC-3 protein; KEGG: aeh:Mlg_1043 ABC-3 protein.
  
    0.631
Hhal_2176
PFAM: periplasmic solute binding protein; KEGG: aeh:Mlg_1041 periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family.
  
    0.488
Hhal_2169
Hypothetical protein.
       0.449
Hhal_1377
PFAM: thioesterase superfamily protein; KEGG: pen:PSEEN3629 hypothetical protein.
  
 
 0.412
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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