STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_2174ABC-3 protein; PFAM: transport system permease protein; ABC-3 protein; KEGG: aeh:Mlg_1043 ABC-3 protein. (306 aa)    
Predicted Functional Partners:
Hhal_2176
PFAM: periplasmic solute binding protein; KEGG: aeh:Mlg_1041 periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family.
  
 0.995
Hhal_2175
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aeh:Mlg_1042 ABC transporter related.
 
 0.994
znuC
ABC transporter related protein; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.
 
 0.973
Hhal_1730
PFAM: periplasmic solute binding protein; KEGG: aeh:Mlg_1194 periplasmic solute binding protein.
 
  
 0.908
Hhal_0490
PFAM: periplasmic solute binding protein; KEGG: aeh:Mlg_0972 periplasmic solute binding protein.
 
  
 0.843
Hhal_2171
PFAM: isochorismatase hydrolase; KEGG: aeh:Mlg_2418 isochorismatase hydrolase.
  
    0.630
Hhal_2172
PFAM: outer membrane lipoprotein Slp; KEGG: aeh:Mlg_2419 outer membrane lipoprotein Slp.
       0.623
Hhal_2173
TIGRFAM: outer membrane lipoprotein, Slp family; PFAM: outer membrane lipoprotein Slp; KEGG: aeh:Mlg_2420 outer membrane lipoprotein Slp.
       0.623
Hhal_2170
PFAM: Hpt domain protein; KEGG: sru:SRU_2427 probable sensor/response hybrid, putative.
       0.547
Hhal_1727
PFAM: ABC-3 protein; KEGG: aeh:Mlg_1197 ABC-3 protein.
  
  
 
0.511
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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