STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_2175PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aeh:Mlg_1042 ABC transporter related. (254 aa)    
Predicted Functional Partners:
Hhal_2174
ABC-3 protein; PFAM: transport system permease protein; ABC-3 protein; KEGG: aeh:Mlg_1043 ABC-3 protein.
 
 0.991
Hhal_2176
PFAM: periplasmic solute binding protein; KEGG: aeh:Mlg_1041 periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family.
 
  
 0.977
Hhal_1727
PFAM: ABC-3 protein; KEGG: aeh:Mlg_1197 ABC-3 protein.
 
 0.938
Hhal_1730
PFAM: periplasmic solute binding protein; KEGG: aeh:Mlg_1194 periplasmic solute binding protein.
 
  
 0.900
Hhal_0490
PFAM: periplasmic solute binding protein; KEGG: aeh:Mlg_0972 periplasmic solute binding protein.
 
  
 0.836
Hhal_0185
Molybdate ABC transporter, inner membrane subunit; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
 
    
 0.793
Hhal_0492
PFAM: ABC-3 protein; KEGG: aeh:Mlg_0970 ABC-3 protein.
  
 
 0.774
Hhal_2171
PFAM: isochorismatase hydrolase; KEGG: aeh:Mlg_2418 isochorismatase hydrolase.
  
    0.635
Hhal_2172
PFAM: outer membrane lipoprotein Slp; KEGG: aeh:Mlg_2419 outer membrane lipoprotein Slp.
       0.623
Hhal_2173
TIGRFAM: outer membrane lipoprotein, Slp family; PFAM: outer membrane lipoprotein Slp; KEGG: aeh:Mlg_2420 outer membrane lipoprotein Slp.
       0.623
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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