STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_2190PFAM: UspA domain protein; KEGG: aeh:Mlg_0315 UspA domain protein. (148 aa)    
Predicted Functional Partners:
Hhal_2191
PFAM: carbon starvation protein CstA; KEGG: aeh:Mlg_0314 carbon starvation protein CstA.
 
   
 0.741
crcB
Camphor resistance protein CrcB; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.
     
 0.565
Hhal_2192
KEGG: aeh:Mlg_0313 hypothetical protein.
       0.546
Hhal_0267
PFAM: UspA domain protein; KEGG: aeh:Mlg_1314 UspA domain protein.
  
  
 0.531
gpmA
Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.
   
  
 0.529
Hhal_1414
PFAM: UspA domain protein; KEGG: aeh:Mlg_1314 UspA domain protein.
  
  
 0.522
Hhal_2193
Arsenite efflux ATP-binding protein ArsA; KEGG: aeh:Mlg_0312 arsenite-activated ATPase ArsA; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; TC 3.A.4.1.1.
     
 0.498
Hhal_1862
PFAM: UspA domain protein; KEGG: aeh:Mlg_1314 UspA domain protein.
  
  
 0.494
Hhal_1899
PFAM: Na+/solute symporter; KEGG: aeh:Mlg_2003 Na+/solute symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
     0.412
groL
Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
   
 
 0.400
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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