STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_2192KEGG: aeh:Mlg_0313 hypothetical protein. (92 aa)    
Predicted Functional Partners:
Hhal_2191
PFAM: carbon starvation protein CstA; KEGG: aeh:Mlg_0314 carbon starvation protein CstA.
 
     0.956
Hhal_2193
Arsenite efflux ATP-binding protein ArsA; KEGG: aeh:Mlg_0312 arsenite-activated ATPase ArsA; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; TC 3.A.4.1.1.
 
     0.938
Hhal_1866
KEGG: aeh:Mlg_1292 hypothetical protein.
  
     0.588
Hhal_2190
PFAM: UspA domain protein; KEGG: aeh:Mlg_0315 UspA domain protein.
       0.546
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.