STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_2200PFAM: PhoH family protein; SMART: Nucleotide binding protein, PINc; KEGG: aeh:Mlg_2481 PhoH family protein. (444 aa)    
Predicted Functional Partners:
Hhal_2199
PFAM: amino acid-binding ACT domain protein; KEGG: aeh:Mlg_2479 amino acid-binding ACT domain protein.
       0.710
purL
Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.
       0.613
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
       0.539
Hhal_2197
Hypothetical protein; KEGG: rso:RSc1146 probable transmembrane protein.
       0.503
Hhal_1693
PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: aeh:Mlg_1221 putative serine protein kinase, PrkA.
   
  
 0.502
Hhal_1692
PFAM: protein of unknown function DUF444; KEGG: aeh:Mlg_1222 protein of unknown function DUF444; Belongs to the UPF0229 family.
   
    0.474
Hhal_2137
TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: aeh:Mlg_0409 ribonuclease, Rne/Rng family.
  
    0.438
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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