STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_2242PFAM: Fimbrial protein pilin; KEGG: rme:Rmet_0472 fimbrial protein pilin. (151 aa)    
Predicted Functional Partners:
Hhal_0321
Hypothetical protein; KEGG: cpf:CPF_2568 putative type IV pilin.
 
 
 0.931
Hhal_2255
PFAM: type II and III secretion system protein; NolW domain protein; KEGG: aeh:Mlg_2759 type IV pilus secretin PilQ.
 
   
 0.621
Hhal_1822
KEGG: cvi:CV0483 type IV pilin.
 
   
 0.601
Hhal_2243
Conserved hypothetical protein; RNA-free RNase P that catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. Belongs to the HARP family.
       0.522
Hhal_2022
Type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.509
Hhal_0324
KEGG: tth:TTC1836 hypothetical protein.
 
 
 
 0.429
Hhal_1821
Tfp pilus assembly protein FimT-like protein; KEGG: neu:NE1751 putative type-4 fimbrial pilin related signal peptide protein.
 
   
 0.405
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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