STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_2252KEGG: aeh:Mlg_2753 hypothetical protein. (209 aa)    
Predicted Functional Partners:
Hhal_2253
KEGG: aeh:Mlg_2754 penicillin-binding protein, 1A family; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase.
       0.747
Hhal_1201
PFAM: protein of unknown function DUF484; KEGG: aeh:Mlg_0062 protein of unknown function DUF484.
  
     0.632
Hhal_2255
PFAM: type II and III secretion system protein; NolW domain protein; KEGG: aeh:Mlg_2759 type IV pilus secretin PilQ.
       0.610
Hhal_2277
PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: aeh:Mlg_2772 HNH endonuclease.
  
     0.558
Hhal_2256
KEGG: bbr:BB0073 putative phosphohydrolase; TIGRFAM: putative deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; Belongs to the dGTPase family. Type 2 subfamily.
       0.516
Hhal_2199
PFAM: amino acid-binding ACT domain protein; KEGG: aeh:Mlg_2479 amino acid-binding ACT domain protein.
  
     0.480
Hhal_1183
KEGG: aeh:Mlg_2540 hypothetical protein.
  
     0.477
Hhal_2393
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: aeh:Mlg_2849 endonuclease/exonuclease/phosphatase.
  
     0.477
Hhal_2254
KEGG: bbr:BB0818 hypothetical protein.
       0.468
lapB
Tetratricopeptide TPR_2 repeat protein; Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane; Belongs to the LapB family.
  
     0.461
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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