STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_2255PFAM: type II and III secretion system protein; NolW domain protein; KEGG: aeh:Mlg_2759 type IV pilus secretin PilQ. (372 aa)    
Predicted Functional Partners:
Hhal_0332
PFAM: Fimbrial assembly family protein; KEGG: pca:Pcar_0381 MshA biogenesis protein MshI-1.
  
 
 0.825
Hhal_2256
KEGG: bbr:BB0073 putative phosphohydrolase; TIGRFAM: putative deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; Belongs to the dGTPase family. Type 2 subfamily.
       0.813
Hhal_2254
KEGG: bbr:BB0818 hypothetical protein.
       0.773
Hhal_2253
KEGG: aeh:Mlg_2754 penicillin-binding protein, 1A family; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase.
 
   
 0.739
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
    
 0.723
tolR
Cell division and transport-associated protein TolR; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
     0.681
Hhal_2021
PFAM: type II secretion system protein; KEGG: ppu:PP_0633 type IV pili biogenesis protein PilC.
 
 
 
 0.641
Hhal_2377
Type II secretion system protein E (GspE); Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 
 0.631
Hhal_2242
PFAM: Fimbrial protein pilin; KEGG: rme:Rmet_0472 fimbrial protein pilin.
 
   
 0.621
Hhal_2020
PFAM: type II secretion system protein E; SMART: AAA ATPase; KEGG: aeh:Mlg_2079 type IV-A pilus assembly ATPase PilB.
 
 
 
 0.620
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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