STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_2360KEGG: bch:Bcen2424_5924 conserved hypothetical protein. (216 aa)    
Predicted Functional Partners:
Hhal_2361
TIGRFAM: urea amidolyase related protein; PFAM: biotin/lipoyl attachment domain-containing protein; Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: dar:Daro_0074 allophanate hydrolase subunit 2.
   
 0.973
Hhal_2362
PFAM: Amidase; KEGG: dar:Daro_0075 amidase.
 
   
 0.955
Hhal_2358
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: psb:Psyr_3974 ABC transporter.
 
   
 0.907
Hhal_2356
KEGG: abo:ABO_1887 sulfonate ABC transporter periplasmic-binding protein.
 
     0.894
Hhal_2357
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: abo:ABO_1888 sulfonate ABC transporter permease protein.
 
     0.894
Hhal_2359
KEGG: sus:Acid_0868 hypothetical protein.
 
    
0.858
Hhal_2363
PFAM: glycosyl transferase, group 1; KEGG: ppr:PBPRA0216 putative capsular polysaccharide biosynthesis protein.
       0.605
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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