STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_2368PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: aeh:Mlg_2387 peptidase S8 and S53, subtilisin, kexin, sedolisin; Belongs to the peptidase S8 family. (648 aa)    
Predicted Functional Partners:
Hhal_0314
Hypothetical protein; KEGG: sdn:Sden_2330 Ig-like, group 1.
 
 
 0.729
Hhal_0712
KEGG: aeh:Mlg_0514 hypothetical protein.
 
 
 0.714
Hhal_0149
KEGG: mgm:Mmc1_0877 cytochrome c family protein.
   
 
 0.689
Hhal_1891
KEGG: sde:Sde_1421 hypothetical protein.
   
 
 0.689
Hhal_1542
Hypothetical protein.
  
 
 0.675
Hhal_2365
KEGG: bba:Bd1210 hypothetical protein.
  
 
 0.671
secY
Protein translocase subunit secY/sec61 alpha; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
    
 
 0.648
Hhal_0014
TIGRFAM: TraB family protein; PFAM: TraB determinant protein; KEGG: aeh:Mlg_1394 TraB family protein.
    
   0.640
Hhal_2367
Hypothetical protein.
       0.521
Hhal_1396
DNA translocase FtsK; PFAM: cell divisionFtsK/SpoIIIE; KEGG: aeh:Mlg_1712 cell divisionFtsK/SpoIIIE.
  
 
 0.439
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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