STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_2386PFAM: type II secretion system protein N; KEGG: aeh:Mlg_2383 type II secretion system protein N. (277 aa)    
Predicted Functional Partners:
Hhal_2387
General secretion pathway M protein; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
   
 0.965
Hhal_2388
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
   
 0.961
Hhal_2389
KEGG: aeh:Mlg_2386 general secretion pathway protein K.
 
   
 0.933
Hhal_2376
KEGG: aeh:Mlg_2402 general secretion pathway protein C.
 
   
 0.903
Hhal_2373
TIGRFAM: general secretion pathway protein H; KEGG: aeh:Mlg_2390 general secretion pathway protein H.
 
   
 0.827
Hhal_2374
TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; KEGG: aeh:Mlg_2389 general secretion pathway protein I.
 
   
 0.824
Hhal_2375
TIGRFAM: general secretion pathway protein J; KEGG: aeh:Mlg_2388 general secretion pathway protein J.
 
   
 0.790
Hhal_0471
PFAM: CheW domain protein; KEGG: aeh:Mlg_0991 CheW protein.
  
     0.687
Hhal_0706
KEGG: aeh:Mlg_0519 putative transmembrane protein.
  
     0.637
Hhal_2334
KEGG: aeh:Mlg_0027 YfaZ family protein.
  
     0.633
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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