STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_2404KEGG: aeh:Mlg_0082 Mg chelatase, subunit ChlI; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase. (503 aa)    
Predicted Functional Partners:
Hhal_2324
TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: aeh:Mlg_2630 DNA protecting protein DprA.
 
 0.920
Hhal_0964
KEGG: aeh:Mlg_2437 competence protein F.
 
  
 0.840
Hhal_2103
PFAM: protein of unknown function UPF0102; KEGG: aeh:Mlg_2205 protein of unknown function UPF0102; Belongs to the UPF0102 family.
 
  
 0.770
def-2
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
     0.764
Hhal_2405
PFAM: protein of unknown function DUF526; KEGG: aeh:Mlg_0081 protein of unknown function DUF526.
       0.676
Hhal_1249
PFAM: ComEC/Rec2-related protein; KEGG: aeh:Mlg_1437 ComEC/Rec2-related protein.
 
  
 0.642
Hhal_1314
PFAM: beta-lactamase domain protein; KEGG: lmo:lmo0945 hypothetical protein.
  
  
 0.504
ruvC
Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
  
   
 0.481
Hhal_2406
PFAM: nitrogen regulatory protein P-II; KEGG: aeh:Mlg_0080 nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
       0.476
Hhal_0366
KEGG: mgm:Mmc1_3409 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
    0.453
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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