STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_2405PFAM: protein of unknown function DUF526; KEGG: aeh:Mlg_0081 protein of unknown function DUF526. (91 aa)    
Predicted Functional Partners:
Hhal_2404
KEGG: aeh:Mlg_0082 Mg chelatase, subunit ChlI; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase.
       0.692
Hhal_2136
KEGG: aeh:Mlg_0410 hypothetical protein.
  
     0.600
Hhal_2406
PFAM: nitrogen regulatory protein P-II; KEGG: aeh:Mlg_0080 nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
       0.598
recO
DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
     0.583
smg
PFAM: protein of unknown function DUF494; KEGG: aeh:Mlg_2631 protein of unknown function DUF494; Belongs to the Smg family.
  
     0.580
Hhal_2407
TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: aeh:Mlg_0079 ammonium transporter; TC 1.A.11.
       0.555
Hhal_1206
PFAM: protein of unknown function DUF1243; KEGG: aeh:Mlg_0070 protein of unknown function DUF1243.
  
   
 0.550
Hhal_0961
Carboxylesterase BioH (pimeloyl-CoA synthesis); PFAM: alpha/beta hydrolase fold; KEGG: aeh:Mlg_2434 alpha/beta hydrolase fold.
  
     0.491
rdgC
Putative exonuclease, RdgC; May be involved in recombination; Belongs to the RdgC family.
  
     0.485
Hhal_2105
PFAM: Stringent starvation protein B; KEGG: aeh:Mlg_2207 stringent starvation protein B.
  
     0.480
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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