STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_2409PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aeh:Mlg_0077 ABC transporter related. (201 aa)    
Predicted Functional Partners:
Hhal_2410
PFAM: conserved hypothetical protein 245; KEGG: aeh:Mlg_0076 conserved hypothetical protein 245.
 
  
 0.979
Hhal_2408
Hypothetical protein.
       0.762
Hhal_0491
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aeh:Mlg_0971 ABC transporter related.
  
   
 0.688
ccmA
Heme exporter protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family.
  
     0.545
Hhal_2407
TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: aeh:Mlg_0079 ammonium transporter; TC 1.A.11.
       0.477
Hhal_2406
PFAM: nitrogen regulatory protein P-II; KEGG: aeh:Mlg_0080 nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
       0.415
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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