STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_0258Sigma54 specific transcriptional regulator, Fis family; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: dsy:DSY1810 hypothetical protein. (593 aa)    
Predicted Functional Partners:
Dred_2992
TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor, core-binding region; sigma-54, DNA-binding domain protein; KEGG: dsy:DSY4842 hypothetical protein.
 
   
 0.786
Dred_0259
TIGRFAM: diaminopropionate ammonia-lyase; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: dsy:DSY1809 hypothetical protein.
 
     0.585
Dred_0260
PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: dsy:DSY1807 hypothetical protein.
 
     0.535
Dred_0262
PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; KEGG: dsy:DSY1805 hypothetical protein.
 
     0.479
Dred_0261
Dihydropyrimidinase; PFAM: amidohydrolase; KEGG: dsy:DSY1806 hypothetical protein.
 
     0.454
Dred_0263
N-acyl-D-amino-acid deacylase; PFAM: D-aminoacylase domain protein; Amidohydrolase 3; KEGG: dsy:DSY1804 hypothetical protein.
 
     0.407
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
Server load: medium (56%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.