STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_0322Transcriptional regulator, Fis family; KEGG: mta:Moth_1011 hypothetical protein. (183 aa)    
Predicted Functional Partners:
Dred_2597
TIGRFAM: phage putative tail component; KEGG: bat:BAS3790 hypothetical protein.
   
    0.697
Dred_0318
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fnu:FN0827 ABC transporter ATP-binding protein.
  
    0.467
Dred_0321
Outer membrane protein-like protein; KEGG: tbr:Tb927.8.4950 kinesin.
       0.466
Dred_0319
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bmb:BruAb1_1658 HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.455
Dred_0320
PFAM: protein of unknown function DUF214; KEGG: ppd:Ppro_3235 protein of unknown function DUF214.
       0.455
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.