STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_0370PFAM: phage integrase family protein; KEGG: btl:BALH_1136 integrase; Belongs to the 'phage' integrase family. (304 aa)    
Predicted Functional Partners:
Dred_0863
PFAM: phage integrase domain protein SAM domain protein; KEGG: gka:GKP13 integrase/recombinase; Belongs to the 'phage' integrase family.
  
     0.769
recR
DNA replication and repair protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
  
   
 0.548
Dred_3081
PFAM: phosphoribosyltransferase; KEGG: swo:Swol_0188 phosphoribosyltransferase.
  
    0.531
Dred_1934
DNA translocase FtsK; PFAM: cell divisionFtsK/SpoIIIE; KEGG: chy:CHY_1159 DNA translocase FtsK.
  
   
 0.492
Dred_2583
PFAM: cell divisionFtsK/SpoIIIE; KEGG: dsy:DSY2164 hypothetical protein.
  
   
 0.465
hslV
ATP dependent peptidase CodWX, CodW component, Threonine peptidase, MEROPS family T01B; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.
  
    0.463
Dred_1150
PFAM: Prephenate dehydrogenase; KEGG: mta:Moth_1333 prephenate dehydrogenase.
  
    0.407
Dred_2783
PFAM: phage integrase family protein; KEGG: bce:BC1272 DNA integration/recombination/invertion protein; Belongs to the 'phage' integrase family.
 
 
 
0.401
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.