STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_0404Glutaconate CoA-transferase; PFAM: coenzyme A transferase; KEGG: swo:Swol_1481 glutaconate CoA-transferase. (269 aa)    
Predicted Functional Partners:
Dred_0403
Glutaconate CoA-transferase; PFAM: coenzyme A transferase; KEGG: dsy:DSY1569 hypothetical protein.
 0.999
Dred_1891
Glutaconate CoA-transferase; PFAM: coenzyme A transferase; KEGG: rxy:Rxyl_1583 glutaconate CoA-transferase.
  
  
 
0.913
Dred_0402
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: chy:CHY_1602 butyryl-CoA dehydrogenase.
  
  
 0.664
Dred_0401
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ctc:CTC02427 putative crotonase.
  
 
 0.610
Dred_0347
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: chy:CHY_1609 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase/isomerase family protein.
  
 
 0.602
Dred_0400
KEGG: chy:CHY_1604 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
  
 0.546
Dred_1065
acetyl-CoA carboxylase carboxyltransferase subunit alpha; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
  
 
 0.450
Dred_0353
PFAM: alpha/beta hydrolase fold; Thioesterase; KEGG: dsy:DSY2637 hypothetical protein.
 
  
 0.444
Dred_1495
PFAM: iron-containing alcohol dehydrogenase; KEGG: bld:BLi04290 putative alcohol dehydrogenase/acetaldehyde dehydrogenase; RBL03615; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.425
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.