STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_0405PFAM: S23 ribosomal protein; KEGG: chy:CHY_0463 intervening sequence, 23S rRNA. (117 aa)    
Predicted Functional Partners:
Dred_1042
Hypothetical protein; KEGG: cno:NT01CX_1596 pilin (bacterial filament) subfamily.
  
  
 0.627
Dred_1022
PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase; KEGG: mta:Moth_1554 type II secretion system protein E.
  
 
 0.606
Dred_1034
PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: ace:Acel_1322 type II secretion system protein E.
  
 
 0.606
Dred_1023
PFAM: type II secretion system protein; KEGG: mta:Moth_1552 type II secretion system protein.
  
  
 0.570
Dred_1036
PFAM: type II secretion system protein; KEGG: rxy:Rxyl_1164 type II secretion system protein.
  
  
 0.570
Dred_3143
PFAM: copper amine oxidase domain protein; KEGG: lwe:lwe0250 competence protein ComEC/Rec2-related protein.
   
  
 0.513
Dred_2510
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: mta:Moth_0575 DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.453
Dred_2250
KEGG: bth:BT0352 hypothetical protein.
  
     0.424
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.