STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_0441PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: swo:Swol_2044 YbaK/EbsC family protein. (154 aa)    
Predicted Functional Partners:
Dred_1087
CheC, inhibitor of MCP methylation; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein; KEGG: chy:CHY_1020 flagellar motor switch protein.
    
   0.865
Dred_2380
CheC, inhibitor of MCP methylation; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein; KEGG: chy:CHY_1020 flagellar motor switch protein.
    
   0.865
Dred_0754
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sth:STH2778 hypothetical protein.
      0.808
Dred_0442
PFAM: protein of unknown function DUF6, transmembrane; Protein of unknown function DUF250; UAA transporter; KEGG: chy:CHY_0101 hypothetical protein.
 
     0.767
Dred_3222
TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: btk:BT9727_3116 probable transcriptional regulator.
 
     0.564
Dred_0440
KEGG: bca:BCE_5051 hypothetical protein.
       0.505
Dred_2402
PFAM: flagellar hook capping protein; KEGG: tde:TDE2769 flagellar hook assembly scaffolding protein.
    
   0.436
fliE
TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: chy:CHY_0992 flagellar hook-basal body complex protein FliE.
    
   0.436
Dred_0443
KEGG: gsu:GSU0371 carbohydrate phosphorylase family protein; TIGRFAM: alpha-glucan phosphorylases; PFAM: glycosyl transferase, family 35.
       0.416
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.