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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_0484PFAM: extracellular solute-binding protein, family 5; KEGG: dsy:DSY0502 hypothetical protein. (523 aa)    
Predicted Functional Partners:
Dred_2453
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: chy:CHY_1129 oligopeptide/dipeptide ABC transporter, permease protein.
 
 0.961
Dred_0390
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbo:SBO_1571 putative transport system permease protein.
 
 0.936
Dred_1563
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll9135 Dipeptide transport system permease protein.
 
 0.929
Dred_2452
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsy:DSY0504 hypothetical protein.
 
 0.896
Dred_0391
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mlr6673 peptide ABC transporter, permease protein.
 
 0.890
Dred_1564
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll9134 Dipeptide transport system permease protein.
 
 0.887
Dred_2450
Oligopeptide/dipeptide ABC transporter, ATPase subunit; KEGG: sth:STH2823 oligopeptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 0.787
Dred_2451
Oligopeptide/dipeptide ABC transporter, ATPase subunit; KEGG: sth:STH2824 oligopeptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
  
 0.776
Dred_1565
Oligopeptide/dipeptide ABC transporter, ATPase subunit; KEGG: sth:STH2824 oligopeptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
  
 0.739
Dred_0392
KEGG: cte:CT0655 peptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
  
 0.721
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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