STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_0514PFAM: DNA methylase N-4/N-6 domain protein; KEGG: aav:Aave_0159 site-specific DNA-methyltransferase (adenine-specific). (664 aa)    
Predicted Functional Partners:
Dred_0515
PFAM: type III restriction enzyme, res subunit; KEGG: hdu:HD1690 type III restriction enzyme.
  
 0.959
Dred_2246
PFAM: type III restriction enzyme, res subunit; KEGG: pin:Ping_2486 type III restriction enzyme, res subunit.
  
 0.846
Dred_2252
PFAM: helicase domain protein; type III restriction enzyme, res subunit; SMART: DEAD-like helicases-like; KEGG: ldb:Ldb1232 putative helicase.
 
     0.815
Dred_0513
PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases-like; KEGG: cph:Cpha266_1953 helicase domain protein.
 
     0.794
Dred_2251
KEGG: ldb:Ldb1231 hypothetical protein.
 
     0.786
Dred_0512
PFAM: protein of unknown function DUF262; protein of unknown function DUF1524 RloF; KEGG: ava:Ava_1739 hypothetical protein.
  
    0.676
Dred_0868
PFAM: type III restriction enzyme, res subunit; SMART: DEAD-like helicases-like; KEGG: pen:PSEEN0754 hypothetical protein.
     0.596
Dred_0516
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: chy:CHY_1211 radical SAM domain protein.
       0.400
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.