STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_0607KEGG: bca:BCE_3063 hypothetical protein. (481 aa)    
Predicted Functional Partners:
Dred_0606
Hypothetical protein; KEGG: mta:Moth_1448 ribonucleoside-triphosphate reductase, anaerobic-like.
 
     0.906
Dred_0364
Hypothetical protein; KEGG: dps:DP0065 related to pyruvate formate-lyase activating enzyme.
  
     0.754
Dred_0608
TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: mta:Moth_1763 dihydrolipoamide dehydrogenase.
  
 
 0.690
Dred_2671
PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: dsy:DSY4968 hypothetical protein.
  
     0.642
Dred_0041
PFAM: phosphoribulokinase/uridine kinase; KEGG: tte:TTE1778 uridine kinase.
    
 
 0.547
Dred_1445
PFAM: Nitrate reductase, gamma subunit; KEGG: dsy:DSY0305 hypothetical protein.
  
     0.538
Dred_2145
KEGG: ava:Ava_4779 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
 
 0.500
gcvH-2
Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.
     
 0.492
lipA
Lipoic acid synthetase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.
  
    0.489
Dred_1728
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pab:PAB0213 putative polyferredoxin.
  
 
 0.481
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.