STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_0632PFAM: protein of unknown function UPF0153; KEGG: gfo:orf2375 protein belonging to UPF0153. (244 aa)    
Predicted Functional Partners:
Dred_1273
KEGG: mja:MJ0582 hypothetical protein.
  
     0.667
Dred_1438
Membrane protein-like protein; KEGG: dsy:DSY1707 hypothetical protein.
  
     0.666
Dred_0976
PFAM: TRAG family protein; KEGG: mta:Moth_0365 TraG protein.
  
     0.660
Dred_0988
KEGG: cac:CAC1986 hypothetical protein.
  
     0.650
Dred_0977
SMART: RNA binding S1 domain protein; KEGG: mta:Moth_0352 RNA binding S1.
  
    0.646
Dred_1096
PFAM: small acid-soluble spore protein, alpha/beta type; KEGG: sth:STH1431 small acid-soluble spore protein.
  
     0.625
Dred_2147
KEGG: sth:STH2529 hypothetical protein.
  
     0.587
Dred_0450
PFAM: protein of unknown function DUF327; KEGG: ctc:CTC00667 hypothetical protein.
  
     0.575
Dred_1089
KEGG: chy:CHY_1976 hypothetical protein.
  
     0.569
Dred_2918
KEGG: gka:GK2468 hypothetical protein; Belongs to the 5'(3')-deoxyribonucleotidase family.
  
     0.553
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.