STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_0653PFAM: nitrogen-fixing NifU domain protein; KEGG: mtp:Mthe_0741 nitrogen-fixing NifU domain protein. (163 aa)    
Predicted Functional Partners:
iscS
Aminotransferase, class V; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily.
 
 0.993
Dred_1001
PFAM: aminotransferase, class V; KEGG: dsy:DSY2426 hypothetical protein.
 
 0.991
Dred_0266
TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: tte:TTE2789 selenocysteine lyase.
  
 
 0.950
Dred_0314
KEGG: mta:Moth_2002 biotin/lipoyl attachment.
  
 
 0.950
Dred_0971
Plasmid segregation actin-type ATPase ParM; KEGG: mta:Moth_0345 hypothetical protein.
  
 
 0.766
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 
 0.766
Dred_3115
PFAM: Heat shock protein 70; KEGG: tma:TM0373 dnaK protein.
  
 
 0.766
Dred_0654
KEGG: chy:CHY_0804 MOSC domain protein.
       0.697
Dred_0763
TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: mta:Moth_1653 transcriptional regulator, BadM/Rrf2 family.
  
  
 0.612
Dred_2964
TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: mta:Moth_2094 transcriptional regulator, BadM/Rrf2 family.
  
  
 0.612
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.