STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_0664PFAM: Patatin; KEGG: chy:CHY_2088 patatin family protein. (299 aa)    
Predicted Functional Partners:
Dred_2510
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: mta:Moth_0575 DNA internalization-related competence protein ComEC/Rec2.
     
 0.602
Dred_0665
KEGG: sth:STH2574 histidinol phosphatase; TIGRFAM: histidinol phosphate phosphatase HisJ family; PFAM: PHP C-terminal domain protein; Belongs to the PHP hydrolase family. HisK subfamily.
       0.578
Dred_2080
PFAM: nucleoside recognition domain protein; KEGG: mta:Moth_0938 nucleoside recognition.
 
     0.559
Dred_0663
Putative PAS/PAC sensor protein; KEGG: chy:CHY_2091 sigma-54 dependent transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor, interaction domain-containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase.
       0.528
Dred_0843
PFAM: TRAG family protein; KEGG: tte:TTE2042 ATPase involved in conjugal plasmid transfer.
    
   0.521
Dred_0976
PFAM: TRAG family protein; KEGG: mta:Moth_0365 TraG protein.
    
   0.521
nadE
NH(3)-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
    0.415
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
Server load: medium (58%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.