Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Dred_0697PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: dde:Dde_2390 dissimilatory sulfite reductase (desulfoviridin) alpha and beta subunits-like. (196 aa)    
Predicted Functional Partners:
Dred_3187
KEGG: chy:CHY_2410 dissimilatory sulfite reductase alpha subunit; TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region.
 
  
 0.930
Dred_3186
KEGG: chy:CHY_2409 dissimilatory sulfite reductase subunit B; TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region.
  
  
  0.925
Dred_0637
TIGRFAM: adenylylsulfate reductase, alpha subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: sfu:Sfum_1048 adenylylsulfate reductase, alpha subunit.
  
 
 0.915
Dred_0636
TIGRFAM: adenylylsulfate reductase, beta subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: sfu:Sfum_1047 adenylylsulfate reductase, beta subunit.
    
 0.912
Dred_3199
PFAM: Nitrate reductase, gamma subunit; KEGG: dsy:DSY4518 hypothetical protein.
    
 0.908
Dred_3198
PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: chy:CHY_2403 putative reductase, iron-sulfur cluster-binding subunit.
  
 
 0.907
Dred_1362
PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: pto:PTO0151 cysteine synthase.
   
 
  0.904
Dred_2871
TIGRFAM: cysteine synthases; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: gme:Gmet_1558 cysteine synthase A; Belongs to the cysteine synthase/cystathionine beta- synthase family.
  
 
  0.904
Dred_3197
PFAM: DsrC family protein; KEGG: mta:Moth_1632 DsrC-like protein.
   
 
 0.791
Dred_0695
KEGG: cno:NT01CX_0906 hypothetical protein.
 
     0.655
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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