STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_0762TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: mta:Moth_1673 thioredoxin; Belongs to the thioredoxin family. (108 aa)    
Predicted Functional Partners:
Dred_1736
TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: chy:CHY_0906 thioredoxin-disulfide reductase.
 
 0.924
Dred_1749
Thioredoxin-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dsy:DSY1359 hypothetical protein.
 
 0.911
Dred_2670
TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; Thioredoxin domain; KEGG: dsy:DSY4471 hypothetical protein.
 
 
 0.812
groL
Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
  
 
 0.615
Dred_0761
PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: btk:BT9727_4134 HesA/MoeB/ThiF family protein.
       0.594
Dred_2498
PFAM: chaperonin Cpn60/TCP-1; KEGG: chy:CHY_0413 thermosome, alpha subunit.
   
 
 0.560
Dred_0041
PFAM: phosphoribulokinase/uridine kinase; KEGG: tte:TTE1778 uridine kinase.
    
 
 0.547
Dred_0759
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mta:Moth_1131 two component transcriptional regulator, winged helix family.
  
   0.532
Dred_2668
PFAM: protein of unknown function DUF6, transmembrane; KEGG: btl:BALH_3302 transporter, drug/metabolite exporter family.
      
 0.509
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
  
 0.505
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.