STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_0773PFAM: protein of unknown function DUF965; KEGG: mta:Moth_1643 protein of unknown function DUF965; Belongs to the UPF0297 family. (86 aa)    
Predicted Functional Partners:
Dred_0775
Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.
  
    0.949
Dred_0776
PFAM: protein of unknown function DUF1292; KEGG: mta:Moth_1639 protein of unknown function DUF1292; Belongs to the UPF0473 family.
  
  
 0.891
Dred_0774
PFAM: aldo/keto reductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: chy:CHY_0541 oxidoreductase, aldo/keto reductase family.
 
     0.793
Dred_2057
Putative helix-turn-helix protein, YlxM/p13 family protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
  
     0.768
Dred_2460
PFAM: protein of unknown function DUF633; KEGG: chy:CHY_0459 hypothetical protein.
  
     0.763
Dred_3309
PFAM: protein of unknown function DUF951; KEGG: cpr:CPR_2657 hypothetical protein.
  
     0.754
Dred_1761
PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: dsy:DSY1819 hypothetical protein.
  
     0.722
sepF1
Protein of unknown function DUF552; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA.
  
  
 0.713
polC
DNA polymerase III catalytic subunit, PolC type; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
  
     0.695
Dred_1691
PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; KEGG: mta:Moth_0886 hypothetical protein.
  
     0.651
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.