STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_0776PFAM: protein of unknown function DUF1292; KEGG: mta:Moth_1639 protein of unknown function DUF1292; Belongs to the UPF0473 family. (87 aa)    
Predicted Functional Partners:
Dred_0775
Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.
  
    0.916
Dred_0773
PFAM: protein of unknown function DUF965; KEGG: mta:Moth_1643 protein of unknown function DUF965; Belongs to the UPF0297 family.
  
  
 0.891
Dred_0774
PFAM: aldo/keto reductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: chy:CHY_0541 oxidoreductase, aldo/keto reductase family.
 
     0.786
Dred_2316
KEGG: dsy:DSY1314 hypothetical protein.
  
     0.739
Dred_3160
PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: chy:CHY_2555 nucleotide pyrophosphohydrolase domain protein.
  
    0.644
Dred_2860
PFAM: S-layer domain protein domain protein; KEGG: tte:TTE0861 hypothetical protein.
  
     0.635
Dred_2504
KEGG: swo:Swol_1444 hypothetical protein.
  
     0.602
Dred_0650
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: chy:CHY_2099 ferric uptake regulation protein; Belongs to the Fur family.
  
    0.574
sigI
Sigma-70 region 2 domain protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; Belongs to the sigma-70 factor family. SigI subfamily.
  
     0.551
Dred_2377
KEGG: swo:Swol_1786 hypothetical protein.
  
     0.548
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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