Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Dred_0803PFAM: type II secretion system protein E; KEGG: art:Arth_2933 type II secretion system protein E. (436 aa)    
Predicted Functional Partners:
Dred_0807
Hypothetical protein; KEGG: art:Arth_2927 type II secretion system protein.
 
  
 0.878
Dred_2118
PFAM: type II secretion system protein; KEGG: nca:Noca_3118 type II secretion system protein.
 
  
 0.876
Dred_2117
PFAM: type II secretion system protein; KEGG: rba:RB5941 secretion system protein TadB.
 
  
 0.875
Dred_2114
PFAM: SAF domain; KEGG: vpa:VP2420 putative pilus assembly protein.
 
  
 0.842
Dred_0804
Hypothetical protein.
  
  
 0.835
Dred_0802
Hypothetical protein.
  
  
 0.834
Dred_2112
PFAM: TadE family protein; KEGG: sat:SYN_01494 flp pilus assembly protein family.
 
    0.824
Dred_2113
KEGG: vvy:VV2658 hypothetical protein.
 
    0.782
Dred_2115
PFAM: response regulator receiver; KEGG: rba:RB5175 probable pilus assembly protein CpaE.
 
  
 0.780
Dred_0805
Hypothetical protein.
       0.773
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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