Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Dred_0807Hypothetical protein; KEGG: art:Arth_2927 type II secretion system protein. (290 aa)    
Predicted Functional Partners:
Dred_0803
PFAM: type II secretion system protein E; KEGG: art:Arth_2933 type II secretion system protein E.
 
  
 0.878
Dred_0804
Hypothetical protein.
  
  
 0.872
Dred_2117
PFAM: type II secretion system protein; KEGG: rba:RB5941 secretion system protein TadB.
 
  
 0.860
Dred_0802
Hypothetical protein.
  
  
 0.841
Dred_2114
PFAM: SAF domain; KEGG: vpa:VP2420 putative pilus assembly protein.
 
  
 0.817
Dred_0806
Hypothetical protein.
       0.741
Dred_2112
PFAM: TadE family protein; KEGG: sat:SYN_01494 flp pilus assembly protein family.
 
    0.728
Dred_2116
PFAM: type II secretion system protein E; KEGG: art:Arth_2925 type II secretion system protein E.
 
  
 0.725
Dred_2110
PFAM: Flp/Fap pilin component; KEGG: dde:Dde_2357 pilin, putative.
 
  
 0.720
Dred_0826
KEGG: mta:Moth_0336 hypothetical protein.
  
  
 0.714
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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