STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_0877TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase, IS605 OrfB; KEGG: gka:GK2250 transposase. (372 aa)    
Predicted Functional Partners:
Dred_0876
PFAM: transposase IS200-family protein; KEGG: hma:rrnAC0815 probable transposase.
 
  
 0.909
Dred_0301
PFAM: transposase IS3/IS911 family protein; KEGG: aeh:Mlg_2330 hypothetical protein.
    
   0.534
Dred_0304
KEGG: aeh:Mlg_2336 hypothetical protein.
    
   0.534
Dred_3125
PFAM: transposase IS3/IS911 family protein; KEGG: aeh:Mlg_2336 hypothetical protein.
    
   0.534
cas1-3
CRISPR-associated protein, Cas1 family / CRISPR-associated exonuclease, Cas4 family; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
     0.412
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.