STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_0879KEGG: cpf:CPF_1605 hypothetical protein. (515 aa)    
Predicted Functional Partners:
Dred_0878
PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: bth:BT4011 DNA-methyltransferase.
 
    0.908
Dred_1550
KEGG: dsy:DSY0277 hypothetical protein.
  
  
 0.842
Dred_1691
PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; KEGG: mta:Moth_0886 hypothetical protein.
  
  
 0.833
Dred_0880
PFAM: protein of unknown function DUF955; KEGG: cpf:CPF_1607 hypothetical protein.
       0.565
Dred_1212
KEGG: dsy:DSY2177 hypothetical protein.
  
    0.489
Dred_1220
PFAM: Baseplate J family protein; KEGG: dsy:DSY2174 hypothetical protein.
  
     0.487
Dred_1207
Hypothetical protein; KEGG: gox:GOX2343 putative capsid protein of prophage.
  
     0.484
Dred_1218
KEGG: stt:t1358 hypothetical protein.
  
    0.477
Dred_1213
PFAM: phage major tail tube protein; KEGG: xom:XOO_1589 phage-related tail protein.
  
     0.476
Dred_1216
PFAM: phage late control D family protein; KEGG: plu:plu3427 hypothetical protein.
  
    0.472
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.