STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_0899Hypothetical protein. (235 aa)    
Predicted Functional Partners:
Dred_0898
PFAM: Resolvase, N-terminal domain; Recombinase; KEGG: bld:BLi04323 SpoIVCA.
       0.701
Dred_1769
PFAM: cobalamin B12-binding domain protein; KEGG: gsu:GSU1578 B12-binding protein.
  
  
 0.598
Dred_1771
PFAM: cobalamin B12-binding domain protein; KEGG: gme:Gmet_1574 methylmalonyl-CoA mutase-like.
  
  
 0.598
glmS-2
Glutamate mutase subunit S; Catalyzes the carbon skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate ((2S,3S)-3-methylaspartate).
  
  
 0.598
mltG
Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.
       0.526
Dred_0901
PFAM: peptidase U32; KEGG: cac:CAC1687 collagenase family protease.
       0.426
Dred_1768
KEGG: afu:AF1288a methylmalonyl-CoA mutase, N-terminal domain/subunit; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase.
  
  
 0.419
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.