STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_0909PFAM: Accessory gene regulator B; KEGG: swo:Swol_1290 accessory gene regulator B. (205 aa)    
Predicted Functional Partners:
Dred_2533
KEGG: mta:Moth_1622 signal transduction histidine kinase regulating citrate/malate metabolism.
 
  
  0.934
Dred_2304
Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; KEGG: swo:Swol_1054 signal transduction histidine kinase nitrogen specific-like protein.
  
  
 0.612
Dred_1139
KEGG: bha:BH1920 two-component sensor histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
  
 0.611
Dred_1269
KEGG: bca:BCE_0427 sensor histidine kinase, putative; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
  
 0.611
Dred_1525
KEGG: swo:Swol_1054 signal transduction histidine kinase nitrogen specific-like protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
  
 0.611
Dred_2293
KEGG: swo:Swol_1054 signal transduction histidine kinase nitrogen specific-like protein; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; SMART: PAS domain containing protein.
  
  
 0.611
Dred_3094
Histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: bca:BCE_0427 sensor histidine kinase, putative.
  
  
 0.611
Dred_2957
PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: tte:TTE0870 Response regulators of cell autolysis.
  
  
 0.566
Dred_2169
KEGG: bld:BLi02545 hypothetical protein.
  
     0.524
Dred_3295
KEGG: mta:Moth_2418 hypothetical protein.
  
     0.524
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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