STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_0954PFAM: type II secretion system protein E; KEGG: mta:Moth_0335 type II secretion system protein E. (449 aa)    
Predicted Functional Partners:
Dred_2118
PFAM: type II secretion system protein; KEGG: nca:Noca_3118 type II secretion system protein.
 
  
 0.874
Dred_2117
PFAM: type II secretion system protein; KEGG: rba:RB5941 secretion system protein TadB.
 
  
 0.872
Dred_0955
KEGG: mta:Moth_0336 hypothetical protein.
  
  
 0.865
Dred_0952
KEGG: mta:Moth_0331 hypothetical protein.
 
  
 0.845
Dred_2114
PFAM: SAF domain; KEGG: vpa:VP2420 putative pilus assembly protein.
 
  
 0.843
Dred_0944
PFAM: type II secretion system protein E; KEGG: mta:Moth_0324 type II secretion system protein E.
 
     0.814
Dred_2112
PFAM: TadE family protein; KEGG: sat:SYN_01494 flp pilus assembly protein family.
 
    0.814
Dred_0956
KEGG: mta:Moth_0337 hypothetical protein.
       0.773
Dred_0950
KEGG: mta:Moth_0330 ATPases involved in chromosome partitioning-like.
 
  
 0.771
Dred_2115
PFAM: response regulator receiver; KEGG: rba:RB5175 probable pilus assembly protein CpaE.
  
 0.769
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.