STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_0959KEGG: mta:Moth_0340 hypothetical protein. (143 aa)    
Predicted Functional Partners:
Dred_0960
KEGG: mta:Moth_0341 hypothetical protein.
       0.621
Dred_0953
Hypothetical protein; KEGG: mta:Moth_0334 Flp pilus assembly CpaB.
  
  
 0.568
Dred_0952
KEGG: mta:Moth_0331 hypothetical protein.
  
  
 0.564
Dred_0955
KEGG: mta:Moth_0336 hypothetical protein.
  
  
 0.549
Dred_0945
KEGG: mta:Moth_0325 hypothetical protein.
  
  
 0.483
Dred_0963
PFAM: glycosyl transferase, family 2; KEGG: gme:Gmet_0242 hypothetical protein.
  
    0.468
Dred_2115
PFAM: response regulator receiver; KEGG: rba:RB5175 probable pilus assembly protein CpaE.
  
  
 0.463
Dred_0804
Hypothetical protein.
  
  
 0.456
Dred_0824
PFAM: SAF domain; KEGG: mta:Moth_0334 Flp pilus assembly CpaB.
  
  
 0.456
Dred_2114
PFAM: SAF domain; KEGG: vpa:VP2420 putative pilus assembly protein.
  
  
 0.456
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.