STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_0961KEGG: pca:Pcar_1756 hypothetical protein. (444 aa)    
Predicted Functional Partners:
Dred_0963
PFAM: glycosyl transferase, family 2; KEGG: gme:Gmet_0242 hypothetical protein.
 
     0.808
Dred_0962
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: aba:Acid345_3127 methyltransferase type 11.
       0.773
Dred_0964
KEGG: bcl:ABC3456 vancomycin resistance protein.
       0.615
Dred_0965
Hypothetical protein.
       0.615
Dred_0966
KEGG: mta:Moth_0344 hypothetical protein.
       0.615
Dred_0960
KEGG: mta:Moth_0341 hypothetical protein.
       0.566
Dred_0967
PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: dsy:DSY2171 hypothetical protein; Belongs to the 'phage' integrase family.
       0.474
Dred_0959
KEGG: mta:Moth_0340 hypothetical protein.
       0.454
Dred_2117
PFAM: type II secretion system protein; KEGG: rba:RB5941 secretion system protein TadB.
 
     0.452
Dred_2118
PFAM: type II secretion system protein; KEGG: nca:Noca_3118 type II secretion system protein.
 
     0.444
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.