STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_1027Hypothetical protein. (212 aa)    
Predicted Functional Partners:
Dred_1026
KEGG: cno:NT01CX_1599 hypothetical protein.
  
  
 0.953
Dred_1028
KEGG: rno:683554 hypothetical protein LOC683554.
  
  
 0.949
Dred_1024
Hypothetical protein; KEGG: shn:Shewana3_0154 general secretion pathway protein G.
  
  
 0.782
Dred_1031
KEGG: chy:CHY_0641 hypothetical protein.
  
  
 0.780
Dred_1025
Hypothetical protein; KEGG: mta:Moth_1549 N-terminal methylation.
  
  
 0.772
Dred_1030
PFAM: Fimbrial assembly family protein.
     
 0.769
Dred_1029
TIGRFAM: type IV pilus assembly protein PilM; KEGG: sfu:Sfum_0537 type IV pilus assembly protein PilM.
     
 0.768
Dred_1023
PFAM: type II secretion system protein; KEGG: mta:Moth_1552 type II secretion system protein.
     
 0.679
Dred_1032
Microcin-processing peptidase 2, Unknown type peptidase, MEROPS family U62; PFAM: peptidase U62, modulator of DNA gyrase; KEGG: mta:Moth_1542 peptidase U62, modulator of DNA gyrase.
       0.507
Dred_1022
PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase; KEGG: mta:Moth_1554 type II secretion system protein E.
     
 0.448
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.