STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_1303PFAM: microcompartments protein; KEGG: dsy:DSY0410 hypothetical protein. (181 aa)    
Predicted Functional Partners:
Dred_1301
PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: dsy:DSY0412 hypothetical protein.
 
 
 0.971
Dred_1302
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: dsy:DSY0411 hypothetical protein.
 
    0.944
Dred_3271
PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: dsy:DSY4998 hypothetical protein.
 
 
 0.911
Dred_1300
PFAM: cobalamin adenosyltransferase; KEGG: ctc:CTC02171 ethanolamine utilization protein.
 
  
 0.890
Dred_1304
PFAM: protein of unknown function DUF861, cupin_3; Ethanolamine utilisation EutQ family protein; Cupin 2, conserved barrel domain protein; KEGG: dsy:DSY0409 hypothetical protein.
 
  
 0.867
Dred_1298
PFAM: microcompartments protein; KEGG: dsy:DSY4965 hypothetical protein.
 
  
 0.835
Dred_3270
PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: dsy:DSY4997 hypothetical protein.
 
    0.793
Dred_3286
PFAM: microcompartments protein; KEGG: dsy:DSY5009 hypothetical protein.
 
   
 0.737
Dred_1299
PFAM: microcompartments protein; KEGG: dsy:DSY4991 hypothetical protein.
 
   
0.681
Dred_1306
Propanediol utilization protein; Involved in 1,2-propanediol (1,2-PD) degradation by catalyzing the conversion of propanoyl-CoA to propanoyl-phosphate.
 
  
 0.676
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.