STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_1374PFAM: Allergen V5/Tpx-1 family protein; KEGG: bcl:ABC2540 hypothetical protein. (129 aa)    
Predicted Functional Partners:
Dred_0371
PFAM: Ig domain protein, group 2 domain protein; KEGG: swo:Swol_1304 hypothetical protein.
   
    0.428
Dred_0835
KEGG: mta:Moth_0344 hypothetical protein.
   
    0.428
Dred_0966
KEGG: mta:Moth_0344 hypothetical protein.
   
    0.428
Dred_2125
PFAM: Ig domain protein, group 2 domain protein; KEGG: swo:Swol_1304 hypothetical protein.
   
    0.428
Dred_1722
PFAM: inner-membrane translocator; KEGG: gsu:GSU3393 branched-chain amino acid ABC transporter, permease protein; TC 3.A.1.4.-; Belongs to the binding-protein-dependent transport system permease family.
    
   0.400
Dred_2238
Amino acid/amide ABC transporter membrane protein 2, HAAT family; PFAM: inner-membrane translocator; KEGG: mta:Moth_2500 inner-membrane translocator; TC 3.A.1.4.-; Belongs to the binding-protein-dependent transport system permease family.
    
   0.400
Dred_2933
PFAM: inner-membrane translocator; KEGG: lip:LI0498 branched chain amino acid ABC transporter, permease protein; TC 3.A.1.4.-; Belongs to the binding-protein-dependent transport system permease family.
    
   0.400
Dred_3140
KEGG: cno:NT01CX_1557 conserved protein, putative.
    
   0.400
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.